Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015906577.1_cds_XP_016456716.1_50526
CDS Infomation

[gene=LOC107780667] [db_xref=GeneID:107780667] [protein=phospholipase D beta 1-like] [protein_id=XP_016456716.1] [location=join(104990..105940,106419..106535,107612..107806,108021..108269,108347..108415,108508..108655,108967..109115,109829..110002,110118..110315,110449..110742)] [gbkey=CDS]
Sequence

ATGGCTCATTTGTCTTATTCTGATTCTCTGAGTTCACAACATGGTCAAGGTGTCCAAGTT
CTCCCATTTAAGACATCAACAGGATCACTTAGGGTGTTGTTGTTGCACGGAAACTTAGAT
ATTTGGGTAAGGGAAGCCAAGAATTTGCCAAACATGGATTTATTTCATAAGAAATTGGAT
AATTTGATTGGAGGATTGGCAAAACTTGGCAGTAAAAAGGAAGGCGCCACAAAGATTACT
AGTGATCCATATGTTACAGTTTCAGTATCTAATGCTGTGGTTGCTAGAACATATGTGATT
ACCAATAGCGAAAATCCAGTTTGGATGCAACACTTTTATGTACCAGTAGCACATTACGCA
CCAGAAGTTCACTTTGTTGTTAAAGATAACGATGTTGTAGGATCTCAAATTATAGGTGCT
GTTGGAATTCCAGTGGAGCAGCTTTGTTCTGGTGAACTGATTGAGGGAACATTTCCAATT
CTTAATGCTAGTGGGAAGCCTTGTAAGGAAGGAGCTGTCTTGACTTTATCAATTCAATTC
ACTCCAATGGAGAGGGTACCTCTTTATTATGGTGGTGTAGGAGGAGATCACGAGTATAAG
GGCGTGCCGGGAACTTATTTCCCGCTCAGAAGAGGCGGAAAAGTAACACTTTATCAAGAT
GCTCATGTACCCGAAGGCAGCCTTCCGAATTTGTGGCTTGAAAATGGAGTGCAGTATAAG
CACGGACAGTGTTGGCAGGATATGTTCAATGCCATCAATCAGGCTCGTCGGTTGATTTAC
ATTACAGGATGGTCAGTGTACCACCTAGTTACACTTGTTAGGGATAATGGCAAAGCTGAG
GAGAGCATGTTGGGGGAAGTTCTCAAGAGGAAGTCACAAGAAGGTGTGAGAGTATTGCTG
CTTATATGGGATGATCCTACTTCTTCTAAGAGCATTTTGGGATACAAAAGTGAAGGAATC
ATGGGAACTAGTGATGAAGAAACTCGTCGCTATTTTAAGCATTCTTCAGTGCACGTGCTA
CTTTGTCCCCGTTCTGCTGGAAAAGGACACAGCTGGGTCAAAAAGCAGGAAACTGGAACA
ATATACACACATCATCAGAAAACTGTAATAGTGGATGCGGATGCTGGTAATTACCAGAGA
AAGATTATCGCTTTCGTTGGGGGCCTTGATTTGTGCAAAGGGCGTTATGATACTCCACAA
CACCCTATCTTTAAAACATTGAAAAATGTGCACAAAGATGACTATCATCAGCCTAACTAC
ACGGGCCCTACTACCGGTTGTCCTAGAGAACCTTGGCATGATTTACATAGTCGGATCGAG
GGGCCTGCTGCATATGATGTCCTAACTAACTTCGAGGAGCGCTGGTTGAAGGCTTCAAAG
CGCCATGGACTTCAAAAGATGAAAGCTTCACAAGATGATGCATTACTCCAACTTGACAGG
ATTCCCGACATTTTAAAAATAGCTGATGTCCCTTGCCTAGGAGAAGATGATGCAGATACG
TGGCACGTCCAGATTTTTCGGTCGATCGACTCCAACTCTGTTAAAGGTTTCCCCAAAGAT
CCTAAAGAAGCCACTAACAAGAATCTAGTTTGTGGTAAGAATGTTCTGATAGATATGAGC
ATACATACTGCCTATGTAAAGGCAATCCGAGCTGCCCAACATTTCATCTACATTGAGAAC
CAGTACTTCCTAGGGTCCTCTTACAATTGGAGTAACTACCAAAATTTAGGTGCAAATAAC
TTGATACCAATGGAGATTGCTCTAAAAATTGCCAACAAAATACGGGCAAATGAGAGGTTT
TCAGTATATATAGTTGTTCCTATGTGGCCAGAAGGTGTTCCAACCAGTACTGCTACTCAG
AGAATACTTTTTTGGCAGCACAATACCATGCAGATGATGTATGAGACAATTTACAAAGCT
TTAGTTGAGGTAGGGCTGGAAAACACATATGAACCCCAAGACTACTTGAATTTCTTCTGC
CTTGGCAATCGCGAGGTTCAGGAAGATGGAAACAATGCAGTTGTCAAAAGTTCTAAGCCA
ACTACACCTCAAGAACTCAGTCAGAAAAGTCGACGTTTTATGATATATGTACATTCAAAA
GGAATGATAGTGGACGATGAATATGTTATATTGGGATCTGCAAACATTAATCAACGTTCC
CTGGAAGGCACCAGAGATACTGAAATTGCAATGGGTTCATATCAACCTCATCATACATGG
GCAACCAAACACTGTCAACCACATGGACAGGTATACGGCTATAGGATGTCTCTGTGGGCA
GAGCACACGGGAACTCTTGAGCAATGTTTCGAGCATCCAGAGAGTCTTGAATGCGTGAGA
CGGATAAGAGTATTTGGCGAACACAACTGGCTACAATACGCGGCTGATGAAGTAACTGAG
ATGAGAGGCCACCTTCTTAAGTATCCTGTTGAAGTTGATCGAACGGGAAAGGTCAAGTCA
CTACCTGGCTGTGAAACCTTTCCAGATATCGGAGGGAAGATAATAGGTACATTCACCGGC
GTTCAAGAAAATCTCACTATCTGA

Peptide Sequence

PEP ID

XP_016456716.1
PEP Infomation

PREDICTED: phospholipase D beta 1-like [Nicotiana tabacum]
Sequence

MAHLSYSDSLSSQHGQGVQVLPFKTSTGSLRVLLLHGNLDIWVREAKNLPNMDLFHKKLD
NLIGGLAKLGSKKEGATKITSDPYVTVSVSNAVVARTYVITNSENPVWMQHFYVPVAHYA
PEVHFVVKDNDVVGSQIIGAVGIPVEQLCSGELIEGTFPILNASGKPCKEGAVLTLSIQF
TPMERVPLYYGGVGGDHEYKGVPGTYFPLRRGGKVTLYQDAHVPEGSLPNLWLENGVQYK
HGQCWQDMFNAINQARRLIYITGWSVYHLVTLVRDNGKAEESMLGEVLKRKSQEGVRVLL
LIWDDPTSSKSILGYKSEGIMGTSDEETRRYFKHSSVHVLLCPRSAGKGHSWVKKQETGT
IYTHHQKTVIVDADAGNYQRKIIAFVGGLDLCKGRYDTPQHPIFKTLKNVHKDDYHQPNY
TGPTTGCPREPWHDLHSRIEGPAAYDVLTNFEERWLKASKRHGLQKMKASQDDALLQLDR
IPDILKIADVPCLGEDDADTWHVQIFRSIDSNSVKGFPKDPKEATNKNLVCGKNVLIDMS
IHTAYVKAIRAAQHFIYIENQYFLGSSYNWSNYQNLGANNLIPMEIALKIANKIRANERF
SVYIVVPMWPEGVPTSTATQRILFWQHNTMQMMYETIYKALVEVGLENTYEPQDYLNFFC
LGNREVQEDGNNAVVKSSKPTTPQELSQKSRRFMIYVHSKGMIVDDEYVILGSANINQRS
LEGTRDTEIAMGSYQPHHTWATKHCQPHGQVYGYRMSLWAEHTGTLEQCFEHPESLECVR
RIRVFGEHNWLQYAADEVTEMRGHLLKYPVEVDRTGKVKSLPGCETFPDIGGKIIGTFTG
VQENLTI

Transcript Sequence

Gene sequence data has not been registered.